SSR Molecular Fingerprint Dataset for 291 Grape Varieties

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  • 1. Hebei Academy of Forestry and Grassland Science, Shijiazhuang 050061, China
    2. Research Institute of Pomology, Chinese Academy of Agricultural Sciences/Key Laboratory of Horticultural Crops Germplasm Resources Utilization, Ministry of Agriculture and Rural Affairs, Xingcheng 125100, Liaoning, China
    3. Huailai County Urban Investment Agricultural Development Co., Ltd.,Shijiazhuang 050061, China

Received date: 2024-03-06

  Accepted date: 2024-04-02

  Online published: 2025-02-05

Abstract

China occupies an important position in the global grape industry, with cultivation area and yield ranking among the top in the world. As a key branch of the fruit tree industry, the grape industry plays a pillar role in increasing farmers' income and rural revitalization. China's grape variety collection has grown, thanks to the introduction of grapes from other countries and new types developed within China. These additions have been a key factor in growing and strengthening the grape industry. However, the increase in variety has also brought about homogenization and identification difficulties, and traditional morphological feature identification methods are no longer suitable for current needs. This investigation entailed the extraction of DNA from 291 table grape germplasm samples. Employing 30 fluorescently-tagged SSR molecular markers, PCR amplification and fluorescent capillary electrophoresis were conducted to establish a molecular fingerprint database for these cultivars. The molecular fingerprint database constructed in this study contains a total of 8730 pieces of information. Further analysis shows that the average number of genotypes for the 30 selected primer loci is 10.7, with a heterozygosity range of 0.21 to 0.62 and an average heterozygosity of 0.38. Based on the number of genotypes at 30 primer loci, 216 varieties were speculated to be diploid, while 75 were polyploid. It was found that the similarity between diploid varieties was generally low, while the similarity between polyploid varieties was relatively high. The results of this study not only provide accurate basis for grape variety identification, but also provide important data for the analysis of genetic relationships of germplasm resources, which is of great significance for theoretical research and practical applications.

Data summary:

Items Description
Dataset name SSR Molecular Fingerprint Dataset for 291 Grape Varieties
Specific subject area Agronomy, biology
Research topic SSR molecular fingerprint of grape varieties
Time range 2022—2023
Temporal resolution one year
Geographical scope Huailai County, Zhangjiakou City, Hebei Province
Data types and technical formats .XLSX
Dataset structure This dataset consists of 6 table data, mainly including PCR product molecular weight information of 291 grape varieties and 30 primer sites, primer names and sequence information of 30 pairs of primers, variety ploidy inference results, polyploid variety similarity matrix, diploid variety similarity matrix, and genotype frequency.
Volume of dataset 299 kB
Data accessibility DOI:10.57760/sciencedb.agriculture.00103
CSTR:17058.11.sciencedb.agriculture.00103
Financial support National Key R&D Program(2023YFD1200100); National Agricultural Science and Technology Park Special Project (2021C-01); Key R&D Plan of Shandong Province (2022TZXD0010); The Agricultural Science and Technology Innovation Program of the Chinese Academy of Agricultural Sciences (CAAS-ASTIP-2021-RIP-02); Huailai Grape and Wine Industry Technology Mission

Cite this article

WU YaJing, JI XiaoHao, YU YiFei, SHI Meng, WANG XiaoDi, WANG BaoLiang, LIU FengZhi, LI MingLiang, LI He, LIU Jun, WANG HaiBo . SSR Molecular Fingerprint Dataset for 291 Grape Varieties[J]. Journal of Agricultural Big Data, 2025 , 7(1) : 112 -117 . DOI: 10.19788/j.issn.2096-6369.100022

References

[1] 亓桂梅, 李旋, 赵艳侠, 等. 2017年世界葡萄及葡萄酒生产及流通概况. 中外葡萄与葡萄酒, 2018(1):68-74.
[2] 刘凤之. 中国葡萄栽培现状与发展趋势. 落叶果树, 2017, 49(1):1-4.
[3] 郭大龙, 刘崇怀, 张君玉, 等. 葡萄核心种质的构建. 中国农业科学, 2012, 45(6):1135-1143.
[4] 杨亚蒙, 姜建福, 樊秀彩, 等. 2000年以来我国葡萄国外引种概况. 中外葡萄与葡萄酒, 2018(2):54-59.
[5] 孟聚星, 姜建福, 张国海, 等. 我国育成的葡萄新品种系谱分析. 果树学报, 2017, 34(4):393-409.
[6] 李绍华, 梁振昌. 中国科学院植物研究所葡萄科研六十载. 生命世界, 2018(4):28-35.
[7] 李贝贝, 姜建福, 张颖, 等. 葡萄品种DNA指纹数据库的构建及遗传多样性分析. 植物遗传资源学报, 2018, 19(2):338-350.
[8] 王姣, 刘崇怀, 樊秀彩, 等. 葡萄种类和品种鉴定技术研究进展. 植物遗传资源学报, 2008(3):401-405.
[9] 刘崇怀, 帖锋, 潘兴, 等. 无核葡萄品种资源性状的聚类分析. 果树学报, 2006(4):531-533.
[10] 陆昱颖, 万然, 樊秀彩, 等. 中国和UPOV、日本葡萄品种DUS测试指南比较分析. 果树学报, 2023, 40(02):363-375.
[11] 赵旗峰, 黄丽萍, 王敏, 等. 基于SSR标记的100份葡萄资源亲缘关系和群体遗传结构分析. 果树学报, 2021, 38(8):1217-1230.
[12] 王衍莉, 杨义明, 范书田, 等. 基于SSR分子标记的73份山葡萄及杂交后代的遗传多样性分析. 生物技术通报, 2021, 37(1):189-197.
[13] 王富强, 李贝贝, 樊秀彩, 等. 葡萄品种SSR分子鉴定体系的建立及应用. 果树学报, 2020, 37(9):1281-1293.
[14] 谭伟, 赵旗峰, 李庆亮. 基于果皮SSR分子标记的二十九个红色酿酒葡萄资源的亲缘关系分析. 北方园艺, 2019(17):41-49.
[15] GODOY J A, JORDANO P. Seed dispersal by animals: Exact identification of source trees with endocarp DNA microsatellites. Molecular Ecology, 2001, 10(9):2275-2283. https://doi.org/10.1046/j.0962-1083.2001.01342.x.
[16] ASUKA Y, TOMARU N, NISIMURA N, et al. Heterogeneous genetic structure in a Faguscrenata population in an old-growth beech forest revealed by microsatellite markers. Molecular Ecology, 2004, 13(5): 1241-1250.https://doi.org/10.1111/j.1365-294X.2004.02118.x.
[17] 郝晨阳, 王兰芬, 贾继增, 等. SSR荧光标记和银染技术的比较分析. 作物学报, 2005(2):144-149.
[18] 高源, 王大江, 王昆, 等. 基于荧光SSR分析中国原产苹果属植物17个种的遗传多样性和遗传结构. 果树学报, 2020, 37(11):1611-1622.
[19] NY/T 3640-2020, 葡萄品种鉴定 SSR分子标记法.
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