农业大数据学报 ›› 2025, Vol. 7 ›› Issue (1): 112-117.doi: 10.19788/j.issn.2096-6369.100022

• 数据资源 • 上一篇    下一篇

291个葡萄品种SSR分子指纹数据集

武亚敬1(), 冀晓昊2, 于祎飞1, 时梦2, 王孝娣2, 王宝亮2, 刘凤之2, 李明亮3, 王贺3, 刘俊1,*(), 王海波2,*()   

  1. 1.河北省林业和草原科学研究院,石家庄 050061
    2.中国农业科学院果树研究所/农业部园艺作物种质资源利用重点实验室,辽宁兴城 125100
    3.怀来县城投农业开发有限公司,石家庄 050061
  • 收稿日期:2024-03-06 接受日期:2024-04-02 出版日期:2025-03-26 发布日期:2025-02-05
  • 通讯作者: 刘俊,E-mail:lkyliujun@163.com
    王海波,E-mail:haibo8316@163.com
  • 作者简介:武亚敬,E-mail:wyjscau@163.com
  • 基金资助:
    国家重点研发计划(2023YFD1200100);国家农业科技园区专项(2021C-01);山东省重点研发计划(2022TZXD0010);中国农业科学院创新工程项目(CAAS-ASTIP-2021-RIP-02);怀来葡萄与葡萄酒产业科技特派团

SSR Molecular Fingerprint Dataset for 291 Grape Varieties

WU YaJing1(), JI XiaoHao2, YU YiFei1, SHI Meng2, WANG XiaoDi2, WANG BaoLiang2, LIU FengZhi2, LI MingLiang3, LI He3, LIU Jun1,*(), WANG HaiBo2,*()   

  1. 1. Hebei Academy of Forestry and Grassland Science, Shijiazhuang 050061, China
    2. Research Institute of Pomology, Chinese Academy of Agricultural Sciences/Key Laboratory of Horticultural Crops Germplasm Resources Utilization, Ministry of Agriculture and Rural Affairs, Xingcheng 125100, Liaoning, China
    3. Huailai County Urban Investment Agricultural Development Co., Ltd.,Shijiazhuang 050061, China
  • Received:2024-03-06 Accepted:2024-04-02 Published:2025-03-26 Online:2025-02-05

摘要:

中国在全球葡萄产业中占据重要地位,栽培面积和产量均居世界前列。作为果树产业的关键分支,葡萄产业对于农民的增收和乡村振兴起到了支柱作用。国外品种的引进和自主培育极大地丰富了我国的葡萄品种储备,为产业发展奠定了基础。但品种增多也带来了品种同质化及鉴定困难,传统的形态特征鉴定方法已不再适应当前的需求。本研究对291份鲜食葡萄种质资源提取DNA,利用30对荧光标记的SSR分子标记进行了PCR和荧光毛细管电泳检测,构建品种分子指纹图谱。本研究构建的分子指纹图谱数据库共包含8 730条信息,进一步分析表明,所选用的30个引物位点平均基因型个数为10.7个,杂合度范围为0.21到0.62,平均杂合度为0.38。依据30个引物位点基因型个数,216个品种被推测为二倍体,75个为多倍体,发现二倍体品种间的相似度普遍较低,而多倍体品种的相似度则相对较高。这项研究的成果不仅为葡萄品种鉴定提供了准确依据,而且为种质资源的亲缘关系分析提供了数据支撑,对葡萄产业理论研究和实际应用均具有重要意义。

数据摘要:

项目 描述
数据库(集)名称 291个葡萄品种SSR分子指纹数据集
所属学科 农学,生物学
研究主题 葡萄品种SSR分子指纹
数据时间范围 2022年—2023年
时间分辨率 1年
数据地理空间覆盖 河北省张家口市怀来县
数据类型与技术格式 .XLSX
数据库(集)组成
本数据集由6个表格数据组成,主要包括291个葡萄品种30个引物位点的PCR产物分子量信息、30对引物的引物名称和序列信息、品种倍性推断结果、多倍体品种相似度矩阵、二倍体品种相似度矩阵和基因型频率。
数据量 299 kB
数据可用性
DOI:10.57760/sciencedb.agriculture.00103
CSTR:17058.11.sciencedb.agriculture.00103
经费支持
国家重点研发计划(2023YFD1200100);国家农业科技园区专项(2021C-01);山东省重点研发计划(2022TZXD0010);中国农业科学院创新工程项目(CAAS-ASTIP-2021-RIP-02);怀来葡萄与葡萄酒产业科技特派团

关键词: 葡萄, 品种鉴定, SSR分子标记, 遗传多样性

Abstract:

China occupies an important position in the global grape industry, with cultivation area and yield ranking among the top in the world. As a key branch of the fruit tree industry, the grape industry plays a pillar role in increasing farmers' income and rural revitalization. China's grape variety collection has grown, thanks to the introduction of grapes from other countries and new types developed within China. These additions have been a key factor in growing and strengthening the grape industry. However, the increase in variety has also brought about homogenization and identification difficulties, and traditional morphological feature identification methods are no longer suitable for current needs. This investigation entailed the extraction of DNA from 291 table grape germplasm samples. Employing 30 fluorescently-tagged SSR molecular markers, PCR amplification and fluorescent capillary electrophoresis were conducted to establish a molecular fingerprint database for these cultivars. The molecular fingerprint database constructed in this study contains a total of 8730 pieces of information. Further analysis shows that the average number of genotypes for the 30 selected primer loci is 10.7, with a heterozygosity range of 0.21 to 0.62 and an average heterozygosity of 0.38. Based on the number of genotypes at 30 primer loci, 216 varieties were speculated to be diploid, while 75 were polyploid. It was found that the similarity between diploid varieties was generally low, while the similarity between polyploid varieties was relatively high. The results of this study not only provide accurate basis for grape variety identification, but also provide important data for the analysis of genetic relationships of germplasm resources, which is of great significance for theoretical research and practical applications.

Data summary:

Items Description
Dataset name SSR Molecular Fingerprint Dataset for 291 Grape Varieties
Specific subject area Agronomy, biology
Research Topic SSR molecular fingerprint of grape varieties
Time range 2022—2023
Temporal resolution one year
Geographical scope Huailai County, Zhangjiakou City, Hebei Province
Data types and technical formats .XLSX
Dataset structure This dataset consists of 6 table data, mainly including PCR product molecular weight information of 291 grape varieties and 30 primer sites, primer names and sequence information of 30 pairs of primers, variety ploidy inference results, polyploid variety similarity matrix, diploid variety similarity matrix, and genotype frequency.
Volume of dataset 299 kB
Data accessibility DOI:10.57760/sciencedb.agriculture.00103
CSTR:17058.11.sciencedb.agriculture.00103
Financial support National Key R&D Program(2023YFD1200100); National Agricultural Science and Technology Park Special Project (2021C-01); Key R&D Plan of Shandong Province (2022TZXD0010); The Agricultural Science and Technology Innovation Program of the Chinese Academy of Agricultural Sciences (CAAS-ASTIP-2021-RIP-02); Huailai Grape and Wine Industry Technology Mission

Key words: grape, variety identification, ssr molecular markers, genetic diversity