Journal of Agricultural Big Data ›› 2025, Vol. 7 ›› Issue (1): 112-117.doi: 10.19788/j.issn.2096-6369.100022

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SSR Molecular Fingerprint Dataset for 291 Grape Varieties

WU YaJing1(), JI XiaoHao2, YU YiFei1, SHI Meng2, WANG XiaoDi2, WANG BaoLiang2, LIU FengZhi2, LI MingLiang3, LI He3, LIU Jun1,*(), WANG HaiBo2,*()   

  1. 1. Hebei Academy of Forestry and Grassland Science, Shijiazhuang 050061, China
    2. Research Institute of Pomology, Chinese Academy of Agricultural Sciences/Key Laboratory of Horticultural Crops Germplasm Resources Utilization, Ministry of Agriculture and Rural Affairs, Xingcheng 125100, Liaoning, China
    3. Huailai County Urban Investment Agricultural Development Co., Ltd.,Shijiazhuang 050061, China
  • Received:2024-03-06 Accepted:2024-04-02 Online:2025-03-26 Published:2025-02-05
  • Contact: LIU Jun, WANG HaiBo

Abstract:

China occupies an important position in the global grape industry, with cultivation area and yield ranking among the top in the world. As a key branch of the fruit tree industry, the grape industry plays a pillar role in increasing farmers' income and rural revitalization. China's grape variety collection has grown, thanks to the introduction of grapes from other countries and new types developed within China. These additions have been a key factor in growing and strengthening the grape industry. However, the increase in variety has also brought about homogenization and identification difficulties, and traditional morphological feature identification methods are no longer suitable for current needs. This investigation entailed the extraction of DNA from 291 table grape germplasm samples. Employing 30 fluorescently-tagged SSR molecular markers, PCR amplification and fluorescent capillary electrophoresis were conducted to establish a molecular fingerprint database for these cultivars. The molecular fingerprint database constructed in this study contains a total of 8730 pieces of information. Further analysis shows that the average number of genotypes for the 30 selected primer loci is 10.7, with a heterozygosity range of 0.21 to 0.62 and an average heterozygosity of 0.38. Based on the number of genotypes at 30 primer loci, 216 varieties were speculated to be diploid, while 75 were polyploid. It was found that the similarity between diploid varieties was generally low, while the similarity between polyploid varieties was relatively high. The results of this study not only provide accurate basis for grape variety identification, but also provide important data for the analysis of genetic relationships of germplasm resources, which is of great significance for theoretical research and practical applications.

Data summary:

Items Description
Dataset name SSR Molecular Fingerprint Dataset for 291 Grape Varieties
Specific subject area Agronomy, biology
Research Topic SSR molecular fingerprint of grape varieties
Time range 2022—2023
Temporal resolution one year
Geographical scope Huailai County, Zhangjiakou City, Hebei Province
Data types and technical formats .XLSX
Dataset structure This dataset consists of 6 table data, mainly including PCR product molecular weight information of 291 grape varieties and 30 primer sites, primer names and sequence information of 30 pairs of primers, variety ploidy inference results, polyploid variety similarity matrix, diploid variety similarity matrix, and genotype frequency.
Volume of dataset 299 kB
Data accessibility DOI:10.57760/sciencedb.agriculture.00103
CSTR:17058.11.sciencedb.agriculture.00103
Financial support National Key R&D Program(2023YFD1200100); National Agricultural Science and Technology Park Special Project (2021C-01); Key R&D Plan of Shandong Province (2022TZXD0010); The Agricultural Science and Technology Innovation Program of the Chinese Academy of Agricultural Sciences (CAAS-ASTIP-2021-RIP-02); Huailai Grape and Wine Industry Technology Mission

Key words: grape, variety identification, ssr molecular markers, genetic diversity